MicroArray Chromosome Analysis Tool


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Documentation for package ‘macat’ version 1.56.0

Help Pages

buildMACAT Create MACAT list from objects in workspace
compute.sliding Compute and plot smoothing of expression values or scores along the chromosome
discreteKernelize Discretize and smooth expression values
discretize Discretize expression values
discretize.tscores Discretize regularized t-scores
discretizeAllClasses.tscores Discretize regularized t-scores
discretizeChromosome Discretize expression values
discretizeOne Discretize expression values
evalScoring Score differential expression, assess significance, and smooth scores along the chromosome
evaluateParameters Evaluate Performance of Kernel Parameters by Cross-validation
getResults Access results of 'evalScoring'
getsteps Smooth expression values or scores
kernelize Smooth expression values or scores
kernelmatrix Smooth expression values or scores
Loader Read in data and produce MACAT list
MACATData Read in data and produce MACAT list
MACATinput Read in data and produce MACAT list
plot.MACATevalScoring Plot function for MACATevalScoring objects.
plot.MACATevP Evaluate Performance of Kernel Parameters by Cross-validation
plotSliding Compute and plot smoothing of expression values or scores along the chromosome
preprocessedLoader Read in data and produce MACAT list
scoring Compute (regularized) t-scores for gene expression data
stjd Subset Microarray Data from St.Jude Children Research Hospital (USA)