buildMACAT | Create MACAT list from objects in workspace |
compute.sliding | Compute and plot smoothing of expression values or scores along the chromosome |
discreteKernelize | Discretize and smooth expression values |
discretize | Discretize expression values |
discretize.tscores | Discretize regularized t-scores |
discretizeAllClasses.tscores | Discretize regularized t-scores |
discretizeChromosome | Discretize expression values |
discretizeOne | Discretize expression values |
evalScoring | Score differential expression, assess significance, and smooth scores along the chromosome |
evaluateParameters | Evaluate Performance of Kernel Parameters by Cross-validation |
getResults | Access results of 'evalScoring' |
getsteps | Smooth expression values or scores |
kernelize | Smooth expression values or scores |
kernelmatrix | Smooth expression values or scores |
Loader | Read in data and produce MACAT list |
MACATData | Read in data and produce MACAT list |
MACATinput | Read in data and produce MACAT list |
plot.MACATevalScoring | Plot function for MACATevalScoring objects. |
plot.MACATevP | Evaluate Performance of Kernel Parameters by Cross-validation |
plotSliding | Compute and plot smoothing of expression values or scores along the chromosome |
preprocessedLoader | Read in data and produce MACAT list |
scoring | Compute (regularized) t-scores for gene expression data |
stjd | Subset Microarray Data from St.Jude Children Research Hospital (USA) |