Clustering algorithm for ddPCR data


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Documentation for package ‘ddPCRclust’ version 1.2.0

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ddPCRclust-package ddPCRclust A package for automated quantification of multiplexed ddPCR data
calculateCPDs Calculates the copies per droplet
createEnsemble Create a cluster ensemble
ddPCRclust ddPCRclust A package for automated quantification of multiplexed ddPCR data
exportPlots Plot the algorithms results with ggplot2
exportToCSV Export the algorithms results to a csv file
exportToExcel Export the algorithms results to an Excel file
readFiles Read the csv files from your disk
readTemplate Read a template file from disk
runDensity Find the clusters using flowDensity
runPeaks Find the clusters using flowPeaks
runSam Find the clusters using SamSPECTRAL
shearCorrection Correct for DNA shearing