Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens


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Documentation for package ‘bcSeq’ version 1.4.1

Help Pages

bcSeq-package Fast Sequence Alignment for High-throughput shRNA and CRISPR Screens
bcSeq_edit Function to perform reads to barcode alignment tolerating edit type error distance.
bcSeq_hamming Function to perform reads to barcode alignment tolerating hamming type error distance
trimRead Tool function to trim adaptor for read sequences.
uniqueBar Tool function to obtain unique barcode sequences from a library .