RPA: Robust Probabilistic Averaging for probe-level analysis


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Documentation for package ‘RPA’ version 1.38.0

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RPA-package RPA: probabilistic analysis of probe reliability and gene expression
calculate.rpa RPA with HITChip
collect.hyperparameters collect.hyperparameters
d.update.fast Fast d update
estimate.affinities estimate.affinities
estimate.hyperparameters estimate.hyperparameters
frpa frpa
get.batches get.batches Split data into batches
get.probe.matrix get.probe.matrix
get.probe.parameters get.probe.parameters
get.probeset Get probeset
hyperparameter.update hyperparameter.update
n.phylotypes.per.oligo n.phylotypes.per.oligo
online.quantile online.quantile Quantile normalization tools for online preprocessing. Estimate quantiles for quantile normalization based on subset of the data (random, or specified by the user).
probe.parameters.tolist probe.parameters.tolist
probe.performance Probe performance
probeplot probeplot Plot RPA results and probe-level data for a specified probeset.
probetable probetable
RPA RPA: probabilistic analysis of probe reliability and gene expression
rpa rpa
rpa.complete Complete RPA preprocessing
rpa.fit RPA fit
RPA.iteration RPA iteration
rpa.online rpa.online
rpa.plot rpa.plot
RPA.preprocess RPA preprocessing
rpa.summarize rpa.summarize
rpaplot rpaplot Plot RPA results and probe-level data for a specified probeset.
sample.probeset sample.probeset
summarize.batch summarize.batch
summarize.batches summarize.batches
summarize.rpa RPA summarization
summarize.sum Sum-based probe summarization
summarize_probedata Summarize probedata
updating.hyperparameters updating hyperparameters