dplyr-based Access to Bioconductor Annotation Resources


[Up] [Top]

Documentation for package ‘Organism.dplyr’ version 1.10.0

Help Pages

AccnumFilter Filtering src_organism objects
AliasFilter Filtering src_organism objects
BasicFilter-class Filtering src_organism objects
cds Extract genomic features from src_organism objects
cdsBy Extract genomic features from src_organism objects
cdsBy_tbl Extract genomic features from src_organism objects
CdsChromFilter Filtering src_organism objects
CdsIdFilter Filtering src_organism objects
CdsNameFilter Filtering src_organism objects
CdsStrandFilter Filtering src_organism objects
cds_tbl Extract genomic features from src_organism objects
CharacterFilter-class Filtering src_organism objects
columns-method Using the "select" interface on src_organism objects
EnsemblFilter Filtering src_organism objects
EnsemblprotFilter Filtering src_organism objects
EnsembltransFilter Filtering src_organism objects
EnzymeFilter Filtering src_organism objects
EvidenceallFilter Filtering src_organism objects
EvidenceFilter Filtering src_organism objects
ExonChromFilter Filtering src_organism objects
exons Extract genomic features from src_organism objects
exonsBy Extract genomic features from src_organism objects
exonsBy_tbl Extract genomic features from src_organism objects
ExonStrandFilter Filtering src_organism objects
exons_tbl Extract genomic features from src_organism objects
fiveUTRsByTranscript Extract genomic features from src_organism objects
fiveUTRsByTranscript_tbl Extract genomic features from src_organism objects
FlybaseCgFilter Filtering src_organism objects
FlybaseFilter Filtering src_organism objects
FlybaseProtFilter Filtering src_organism objects
GeneChromFilter Filtering src_organism objects
genes Extract genomic features from src_organism objects
GeneStrandFilter Filtering src_organism objects
genes_tbl Extract genomic features from src_organism objects
Genomic-Extractors Extract genomic features from src_organism objects
GoallFilter Filtering src_organism objects
GoFilter Filtering src_organism objects
hg38light Utilities used in examples, vignettes, and tests
IntegerFilter-class Filtering src_organism objects
intronsByTranscript Extract genomic features from src_organism objects
intronsByTranscript-method Extract genomic features from src_organism objects
intronsByTranscript_tbl Extract genomic features from src_organism objects
IpiFilter Filtering src_organism objects
keys-method Using the "select" interface on src_organism objects
keytypes-method Using the "select" interface on src_organism objects
MapFilter Filtering src_organism objects
mapIds-method Using the "select" interface on src_organism objects
MgiFilter Filtering src_organism objects
mm10light Utilities used in examples, vignettes, and tests
OmimFilter Filtering src_organism objects
OntologyallFilter Filtering src_organism objects
OntologyFilter Filtering src_organism objects
orgPackageName-method Create a sqlite database from TxDb and corresponding Org packages
PfamFilter Filtering src_organism objects
PmidFilter Filtering src_organism objects
promoters Extract genomic features from src_organism objects
promoters-method Extract genomic features from src_organism objects
promoters_tbl Extract genomic features from src_organism objects
PrositeFilter Filtering src_organism objects
RefseqFilter Filtering src_organism objects
select-method Using the "select" interface on src_organism objects
select_.tbl_organism Create a sqlite database from TxDb and corresponding Org packages
select_tbl Using the "select" interface on src_organism objects
seqinfo-method Create a sqlite database from TxDb and corresponding Org packages
show-method Filtering src_organism objects
src_organism Create a sqlite database from TxDb and corresponding Org packages
src_tbls.src_organism Create a sqlite database from TxDb and corresponding Org packages
src_ucsc Create a sqlite database from TxDb and corresponding Org packages
supportedFilters-method Filtering src_organism objects
supportedOrganisms Create a sqlite database from TxDb and corresponding Org packages
tbl.src_organism Create a sqlite database from TxDb and corresponding Org packages
threeUTRsByTranscript Extract genomic features from src_organism objects
threeUTRsByTranscript_tbl Extract genomic features from src_organism objects
transcripts Extract genomic features from src_organism objects
transcriptsBy Extract genomic features from src_organism objects
transcriptsBy_tbl Extract genomic features from src_organism objects
transcripts_tbl Extract genomic features from src_organism objects
TxChromFilter Filtering src_organism objects
TxStrandFilter Filtering src_organism objects
TxTypeFilter Filtering src_organism objects
UnigeneFilter Filtering src_organism objects
WormbaseFilter Filtering src_organism objects
ZfinFilter Filtering src_organism objects