MultiDataSet-package | MultiDataSet: Implementation of the BRGE's basic classes |
add_eset | Method to add an 'eSet' to 'MultiDataSet'. |
add_eset-method | MultiDataSet instances |
add_genexp | Method to add an expression microarray dataset to 'MultiDataSet'. |
add_genexp-method | MultiDataSet instances |
add_methy | Method to add a slot of methylation to 'MultiDataSet'. |
add_methy-method | MultiDataSet instances |
add_rnaseq | Method to add an expression RNA seq dataset to 'MultiDataSet'. |
add_rnaseq-method | MultiDataSet instances |
add_rse | Method to add a 'RangedSummarizedExperiment' to 'MultiDataSet'. |
add_rse-method | MultiDataSet instances |
add_se | Method to add a 'SummarizedExperiment' to 'MultiDataSet'. |
add_se-method | MultiDataSet instances |
add_snps | Method to add a slot of SNPs to 'MultiDataSet'. |
add_snps-method | MultiDataSet instances |
add_table | Method to add a 'matrix' to 'MultiDataSet'. |
add_table-method | MultiDataSet instances |
as.list | MultiDataSet instances |
as.list-method | MultiDataSet instances |
assayData | MultiDataSet instances |
assayData-method | MultiDataSet instances |
chrNumToChar | Convert chr numbers to chr strings |
commonIds | Get the name of the ids common to all datasets |
commonIds-method | MultiDataSet instances |
commonSamples | Method to select samples that are present in all datasets. |
commonSamples-method | MultiDataSet instances |
createMultiDataSet | MultiDataSet instances |
create_resultset | Class ResultSet |
dims | MultiDataSet instances |
dims-method | MultiDataSet instances |
fData | MultiDataSet instances |
fData-method | MultiDataSet instances |
fData-method | Class ResultSet |
featureData | MultiDataSet instances |
featureData-method | MultiDataSet instances |
getAssociation | Method to extrat feature result from a ResultSet |
getAssociation-method | Class ResultSet |
lambdaClayton | Lambda Calculation for a vector of P-Values |
length | MultiDataSet instances |
length-method | MultiDataSet instances |
length-method | Class ResultSet |
mae2mds | Convert a 'MultiAssayExperiment' to a 'MultiDataSet' |
mds2mae | Convert a 'MultiDataSet' to a 'MultiAssayExperiment' |
MultiDataSet | MultiDataSet: Implementation of the BRGE's basic classes |
MultiDataSet-class | MultiDataSet instances |
MultiDataSet-methods | MultiDataSet instances |
MultiDataSet-methods, | MultiDataSet instances |
names | MultiDataSet instances |
names-method | MultiDataSet instances |
names-method | Class ResultSet |
ncol | MultiDataSet instances |
ncol-method | MultiDataSet instances |
nrow | MultiDataSet instances |
nrow-method | MultiDataSet instances |
opt | Method to get the options sued to create the ResultSet |
opt-method | Class ResultSet |
pData | MultiDataSet instances |
pData-method | MultiDataSet instances |
phenoData | MultiDataSet instances |
phenoData-method | MultiDataSet instances |
plot-method | Class ResultSet |
qq_plot | Function to draw a QQ Plot from a vector of numbers |
ResultSet | Class ResultSet |
ResultSet-class | Class ResultSet |
ResultSet-methods | Class ResultSet |
rowRanges | MultiDataSet instances |
rowRanges-method | MultiDataSet instances |
rowRangesElements | Get the name of the datasets that have rowRanges |
rowRangesElements-method | MultiDataSet instances |
rset | Example 'ResultSet' |
sampleNames-method | MultiDataSet instances |
subset-method | MultiDataSet instances |
varLabels-method | Class ResultSet |
volcano_plot | Function to draw a Volcano Plot |
w_iclusterplus | Apply iClusterPlus clustering method to a MultiDataSet object |
w_iclusterplus-method | MultiDataSet instances |
w_mcia | Apply mcia integration method to a MultiDataSet object |
w_mcia-method | MultiDataSet instances |
[ | MultiDataSet instances |
[-method | MultiDataSet instances |
[[-method | MultiDataSet instances |