INDEED-package | INDEED: A package for biomarker candidate prioritization. |
choose_rho | Draw error curve |
compute_cor | Compute the correlation |
compute_dns | Calculate differential network score |
compute_par | Compute the partial correlation |
INDEED | INDEED: A package for biomarker candidate prioritization. |
loglik_ave | Create log likelihood error function |
Met_Group_GU | Group label. |
Met_GU | GU CIRR and GU HCC combined . |
Met_name_GU | KEGG ID |
non_partial_cor | Non-partial correlaton analysis |
partial_cor | Data preprocessing for partial correlaton analysis |
permutation_cor | Permutations to build differential network using correlation |
permutation_pc | Permutations to build differential network using partial correlation |
permutation_thres | Calculate the positive and negative threshold based on the permutation result |
pre_partial | Data preprocessing for partial correlaton analysis |
pvalue_logit | Obtain p-values using logistic regression |
pvalue_M_GU | P-values obtained by differential expression (DE) analysis. |