IMAS-package | 'IMAS': Integrative analysis of Multi-omics data for Alternative Splicing |
ASvisualization | Visualize the results of the ASdb object. |
Clinical.data | A data frame for clinical data |
ClinicAnalysis | Analysis for differential clinical outcomes across PSI values |
CompGroupAlt | Identify alternatively spliced exons with a differential PSIs between the groups |
ExonsCluster | Construct representative Exons |
GroupSam | Group of each sample. |
IMAS | 'IMAS': Integrative analysis of Multi-omics data for Alternative Splicing |
MEsQTLFinder | Identify methylation loci that are significantly associated with alternatively spliced exons |
RatioFromReads | Calculate expression ratio (PSI) from bamfiles |
samplebamfiles | A data frame for example expression bam files. |
sampleMedata | Methylation level data |
sampleMelocus | Genomic locus of methylations |
samplesnp | Genotype data |
samplesnplocus | Genomic locus of SNPs |
SplicingReads | Count a junction and paired-end reads |