Integrative analysis of Multi-omics data for Alternative Splicing


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Documentation for package ‘IMAS’ version 1.6.1

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IMAS-package 'IMAS': Integrative analysis of Multi-omics data for Alternative Splicing
ASvisualization Visualize the results of the ASdb object.
Clinical.data A data frame for clinical data
ClinicAnalysis Analysis for differential clinical outcomes across PSI values
CompGroupAlt Identify alternatively spliced exons with a differential PSIs between the groups
ExonsCluster Construct representative Exons
GroupSam Group of each sample.
IMAS 'IMAS': Integrative analysis of Multi-omics data for Alternative Splicing
MEsQTLFinder Identify methylation loci that are significantly associated with alternatively spliced exons
RatioFromReads Calculate expression ratio (PSI) from bamfiles
samplebamfiles A data frame for example expression bam files.
sampleMedata Methylation level data
sampleMelocus Genomic locus of methylations
samplesnp Genotype data
samplesnplocus Genomic locus of SNPs
SplicingReads Count a junction and paired-end reads