An effective identification of alternative splicing events using junction arrays and RNA-Seq data


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Documentation for package ‘EventPointer’ version 2.0.1

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AllEvents_RNASeq Alternative splicing events detected by EventPointer
AllEvents_RNASeq_MP Alternative splicing multi-path events detected by EventPointer
ArrayDatamultipath Preprocessed arrays data with multi-path events
ArraysData Preprocessed arrays data
CDFfromGTF CDF file creation for EventPointer
CDFfromGTF_Multipath CDF file creation for EventPointer
EventDetection Detect splicing events using EventPointer methodology
EventDetectionMultipath Detect splicing events using EventPointer methodology
EventPointer EventPointer
EventPointer_IGV EventPointer IGV Visualization
EventPointer_RNASeq Statistical analysis of alternative splcing events for RNASeq data
EventPointer_RNASeq_IGV EventPointer RNASeq IGV Visualization
EventPointer_RNASeq_TranRef Statistical analysis with the output of GetPSI_FromTranRef
EventsGTFfromTrancriptomeGTF Events .gtf from trancriptome .gtf
EventXtrans relationship between isoforms and events
getbootstrapkallisto Author: JF
GetPSI_FromTranRef GetPSI_FromTranRef
PrepareBam_EP Bam files preparation for EventPointer
PSIss relationship between isoforms and events
PSI_Statistic PSI_Statistic
SG_RNASeq Splicing graph elements predicted from BAM files