B2M |
Convert Beta value to M value. |
bmiq.mc |
A multi-processor wrapper of BMIQ method |
ComBat.mc |
A multi-processor wrapper for ComBat method. |
ctrlsva |
Non-negative control surrogate variables |
freqpoly |
Frequency polygon plot |
getBeta |
Extract Beta value. |
M2B |
Convert M value to Beta value. |
mpreprocess |
A pipeline to perform background correction, dye bias correction, inter-array normalization and probe type bias correction for HumanMethylation 450 and MethylationEPIC BeadChip data. |
multifreqpoly |
Frequency polygon plot to display data distribution. |
nmode.mc |
Estimating number of mode in methylaion data for each probe. |
norm.quantile |
Quantile normalization. |
normalize.quantile.450k |
Quantile normalization. |
oxBS.MLE |
oxBS-MLE. |
pcrplot |
Principal component regression plot |
plotCtrl |
Plot internal controls of 450K or MethylationEPIC BeadChip. |
preprocessENmix |
The ENmix background correction for HumanMethylation 450 and MethylationEPIC BeadChip |
QCfilter |
Sample or CpG probe filter. |
QCinfo |
QC information. |
rcp |
Regression on Correlated Probes(RCP) |
relic |
RELIC dye bias correction method for Illumina HumanMethylation450 and MethylationEPIC BeadChip |
rm.outlier |
Filtering out outlier and/or low quality values |