Quantitative comparison of multiple ChIP-seq datasets


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Documentation for package ‘ChIPComp’ version 1.12.0

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ChIPComp-package Detect differential binding sites for ChIP sequencing data
ChIPComp Perform hypothesis testing to detect differential binding sites
makeConf make configurations for experimental design written in csv sheet
makeCountSet make differential binding sites data frame
plot.ChIPComp plot correlation between log ChIP read counts and smoothing control counts in common binding sites.
print.ChIPComp Print top ranked differential binding sites
seqData A 'ChIPComp' object.