Workflow Package: RNAseq123

RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR

Bioconductor version: 3.7

R package that supports the F1000Research workflow article on RNA-seq analysis using limma, Glimma and edgeR by Law et al. (2016).

Author: Charity Law, Monther Alhamdoosh, Shian Su, Gordon Smyth and Matthew Ritchie

Maintainer: Matthew Ritchie <mritchie at wehi.edu.au>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RNAseq123")

Documentation

To view available workflows for the version of this package installed in your system, start R and enter:

browseVignettes("RNAseq123")

 

HTML

R Script

RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR

Details

biocViews	GeneExpressionWorkflow, Workflow
Version	1.2.0
License	Artistic-2.0
Depends	R (>= 3.3.0), Glimma(>= 1.1.9), limma, edgeR, Mus.musculus
Imports
LinkingTo
Suggests	knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	http://f1000research.com/articles/5-1408/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report