DOI: 10.18129/B9.bioc.curatedTCGAData    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see curatedTCGAData.

Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects

Bioconductor version: 3.7

This package provides publicly available data from The Cancer Genome Atlas (TCGA) Bioconductor MultiAssayExperiment class objects. These objects integrate multiple assays (e.g. RNA-seq, copy number, mutation, microRNA, protein, and others) with clinical / pathological data. The MultiAssayExperiment class links assay barcodes with patient IDs, enabling harmonized subsetting of rows (features) and columns (patients / samples) across the entire experiment.

Author: Marcel Ramos <marcel.ramos at>, Levi Waldron <lwaldron.research at>, Lucas Schiffer <schiffer.lucas at>, Valerie Obenchain <valerie.obenchain at>, Morgan Martin <martin.morgan at>

Maintainer: Marcel Ramos <marcel.ramos at>

Citation (from within R, enter citation("curatedTCGAData")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script curatedTCGAData
PDF   Reference Manual
Text   NEWS


biocViews CancerData, ExperimentData, Homo_sapiens_Data, ReproducibleResearch
Version 1.2.0
License Artistic-2.0
Depends R (>= 3.4.0), MultiAssayExperiment
Imports AnnotationHub, ExperimentHub, S4Vectors, utils
Suggests BiocStyle, knitr, readr, rmarkdown, testthat
Depends On Me
Imports Me
Suggests Me TCGAutils
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package curatedTCGAData_1.2.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: