RTCGA.mutations

DOI: 10.18129/B9.bioc.RTCGA.mutations    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see RTCGA.mutations.

Mutations datasets from The Cancer Genome Atlas Project

Bioconductor version: 3.7

Package provides mutations datasets from The Cancer Genome Atlas Project for all cohorts types from http://gdac.broadinstitute.org/. Mutations data format is explained here https://wiki.nci.nih.gov/display/TCGA/Mutation+Annotation+Format+(MAF)+Specification. There is extra one column with patients' barcodes. Data from 2015-11-01 snapshot.

Author: Marcin Kosinski <m.p.kosinski at gmail.com>

Maintainer: Marcin Kosinski <m.p.kosinski at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RTCGA.mutations")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCGA.mutations")

 

HTML	R Script	Using RTCGA to download mutations data as included in RTCGA.mutations
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation Data, ExperimentData
Version	20151101.10.0
License	GPL-2
Depends	R (>= 3.2.0), RTCGA
Imports
LinkingTo
Suggests	knitr
SystemRequirements
Enhances
URL
BugReports	https://github.com/RTCGA/RTCGA/issues
Depends On Me
Imports Me
Suggests Me	RTCGA
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RTCGA.mutations_20151101.10.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan)
Source Repository	git clone https://git.bioconductor.org/packages/RTCGA.mutations
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RTCGA.mutations
Package Short Url	http://bioconductor.org/packages/RTCGA.mutations/
Package Downloads Report	Download Stats