DOI: 10.18129/B9.bioc.HMP16SData    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see HMP16SData.

16S rRNA Sequencing Data from the Human Microbiome Project

Bioconductor version: 3.7

HMP16SData is a Bioconductor ExperimentData package of the Human Microbiome Project (HMP) 16S rRNA sequencing data for variable regions 1–3 and 3–5. Raw data files are provided in the package as downloaded from the HMP Data Analysis and Coordination Center. Processed data is provided as SummarizedExperiment class objects via ExperimentHub.

Author: Lucas Schiffer <schiffer.lucas at>, Rimsha Azhar <rimsha_azhar at>, Marcel Ramos <marcel.ramos at>, Ludwig Geistlinger <ludwig.geistlinger at>, Levi Waldron <lwaldron.research at>

Maintainer: Lucas Schiffer <schiffer.lucas at>

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biocViews ExperimentData, Homo_sapiens_Data, MicrobiomeData, ReproducibleResearch, SequencingData
Version 1.0.1
License Artistic-2.0
Depends R (>= 3.5.0), SummarizedExperiment
Imports AnnotationHub, assertthat, dplyr, ExperimentHub, kableExtra, knitr, magrittr, methods, readr, S4Vectors, tibble, utils
Suggests Biobase, BiocCheck, BiocInstaller, BiocStyle, circlize, covr, cowplot, curatedMetagenomicData, dendextend, devtools, ggplot2, gridExtra, haven, phyloseq, rmarkdown, roxygen2, stats, testthat
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