From a list of miRNA names, find their targets in targetscan.Hs.eg.db annotation package.

mirna2targetscan(mirna, org = NULL, keytype = NULL)

Arguments

mirna

Character vector with miRNA names as in miRBase 21.

org

AnnotationDbi::AnnotationDb obejct. For example:(org.Mm.eg.db)

keytype

Character mentioning the gene id to use. For example, ENSEMBL.

Value

data.frame with 4 columns:

  • miRFamily

  • Seedmatch

  • PCT

  • entrezGene

Examples

mirna2targetscan(c("hsa-miR-34c-5p"))
#> Error in check_valid_colnames(y): object 'map' not found