From a list of miRNA names, find their targets in targetscan.Hs.eg.db annotation package.
mirna2targetscan(mirna, org = NULL, keytype = NULL)
mirna | Character vector with miRNA names as in miRBase 21. |
---|---|
org | AnnotationDbi::AnnotationDb obejct. For example:(org.Mm.eg.db) |
keytype | Character mentioning the gene id to use.
For example, |
data.frame with 4 columns:
miRFamily
Seedmatch
PCT
entrezGene
mirna2targetscan(c("hsa-miR-34c-5p"))#> Error in check_valid_colnames(y): object 'map' not found