DOI: 10.18129/B9.bioc.piano    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see piano.

Platform for integrative analysis of omics data

Bioconductor version: 3.7

Piano performs gene set analysis using various statistical methods, from different gene level statistics and a wide range of gene-set collections. Furthermore, the Piano package contains functions for combining the results of multiple runs of gene set analyses.

Author: Leif Varemo <piano.rpkg at gmail.com> and Intawat Nookaew <piano.rpkg at gmail.com>

Maintainer: Leif Varemo <piano.rpkg at gmail.com>

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PDF R Script Piano - Platform for Integrative Analysis of Omics data
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, GeneExpression, GeneSetEnrichment, Microarray, Pathways, Preprocessing, QualityControl, Software, Visualization
Version 1.20.1
In Bioconductor since BioC 2.12 (R-3.0) (5.5 years)
License GPL (>=2)
Depends R (>= 2.14.0)
Imports BiocGenerics, Biobase, gplots, igraph, relations, marray, fgsea
Suggests yeast2.db, rsbml, plotrix, limma, affy, plier, affyPLM, gtools, biomaRt, snowfall, AnnotationDbi
URL http://www.sysbio.se/piano
BugReports https://github.com/varemo/piano/issues
Depends On Me
Imports Me PharmacoGx
Suggests Me BloodCancerMultiOmics2017
Links To Me
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Source Package piano_1.20.1.tar.gz
Windows Binary piano_1.20.1.zip
Mac OS X 10.11 (El Capitan) piano_1.20.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/piano
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/piano
Package Short Url http://bioconductor.org/packages/piano/
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