This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see openPrimeRui.
Bioconductor version: 3.7
A Shiny application providing methods for designing, evaluating, and comparing primer sets for multiplex polymerase chain reaction. Primers are designed by solving a set cover problem such that the number of covered template sequences is maximized with the smallest possible set of primers. To guarantee that high-quality primers are generated, only primers fulfilling constraints on their physicochemical properties are selected.
Author: Matthias Döring [aut, cre], Nico Pfeifer [aut]
Maintainer: Matthias Döring <mdoering at mpi-inf.mpg.de>
Citation (from within R,
enter citation("openPrimeRui")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("openPrimeRui")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("openPrimeRui")
HTML | R Script | openPrimeRui |
Reference Manual | ||
Text | NEWS |
biocViews | Software, Technology |
Version | 1.2.0 |
License | GPL-2 |
Depends | R (>= 3.4.0), openPrimeR(>= 0.99.0) |
Imports | shiny (>= 1.0.2), shinyjs (>= 0.9), shinyBS (>= 0.61), DT (>= 0.2), rmarkdown (>= 1.0) |
LinkingTo | |
Suggests | knitr (>= 1.13) |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | openPrimeRui_1.2.0.tar.gz |
Windows Binary | openPrimeRui_1.2.0.zip |
Mac OS X 10.11 (El Capitan) | openPrimeRui_1.2.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/openPrimeRui |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/openPrimeRui |
Package Short Url | http://bioconductor.org/packages/openPrimeRui/ |
Package Downloads Report | Download Stats |
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