nudge

DOI: 10.18129/B9.bioc.nudge    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see nudge.

Normal Uniform Differential Gene Expression detection

Bioconductor version: 3.7

Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

Author: N. Dean <nemad at stat.washington.edu> and A. E. Raftery <raftery at stat.washington.edu>

Maintainer: N. Dean <nemad at stat.washington.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("nudge")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nudge")

 

PDF	R Script	nudge Overview
PDF		Reference Manual

Details

biocViews	DifferentialExpression, Microarray, Software, TwoChannel
Version	1.46.0
In Bioconductor since	BioC 1.8 (R-2.3) (12.5 years)
License	GPL-2
Depends
Imports	stats
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	nudge_1.46.0.tar.gz
Windows Binary	nudge_1.46.0.zip
Mac OS X 10.11 (El Capitan)	nudge_1.46.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/nudge
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/nudge
Package Short Url	http://bioconductor.org/packages/nudge/
Package Downloads Report	Download Stats