ndexr

DOI: 10.18129/B9.bioc.ndexr    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see ndexr.

NDEx R client library

Bioconductor version: 3.7

This package offers an interface to NDEx servers, e.g. the public server at http://ndexbio.org/. It can retrieve and save networks via the API. Networks are offered as RCX object and as igraph representation.

Author: Frank Kramer <frank.kramer at med.uni-goettingen.de>, Florian Auer <florian.auer at med.uni-goettingen.de>, Alex Ishkin <aleksandr.ishkin at thomsonreuters.com>, Dexter Pratt <depratt at ucsc.edu>

Maintainer: Florian Auer <florian.auer at med.uni-goettingen.de>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ndexr")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ndexr")

 

HTML	R Script	NDExR Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	DataImport, Network, Pathways, Software
Version	1.2.0
License	BSD
Depends	igraph
Imports	httr, jsonlite, plyr, tidyr
LinkingTo
Suggests	BiocStyle, testthat, knitr, rmarkdown
SystemRequirements
Enhances
URL	https://github.com/frankkramer-lab/ndexr
BugReports	https://github.com/frankkramer-lab/ndexr/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ndexr_1.2.0.tar.gz
Windows Binary	ndexr_1.2.0.zip
Mac OS X 10.11 (El Capitan)	ndexr_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ndexr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ndexr
Package Short Url	http://bioconductor.org/packages/ndexr/
Package Downloads Report	Download Stats