miRBaseConverter

DOI: 10.18129/B9.bioc.miRBaseConverter    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see miRBaseConverter.

A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions

Bioconductor version: 3.7

A comprehensive tool for converting and retrieving the miRNA Name, Accession, Sequence, Version, History and Family information in different miRBase versions. It can process a huge number of miRNAs in a short time without other depends.

Author: Taosheng Xu<taosheng.x at gmail.com>, Thuc Le<Thuc.Le at unisa.edu.au>

Maintainer: Taosheng Xu<taosheng.x at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("miRBaseConverter")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRBaseConverter")

 

HTML	R Script	miRBaseConverter: A comprehensive and high-efficiency tool for converting and retrieving the information of miRNAs in different miRBase versions
PDF		Reference Manual
Text		NEWS

Details

biocViews	Software, miRNA
Version	1.4.3
License	GPL (>= 2)
Depends	R (>= 3.4)
Imports	stats
LinkingTo
Suggests	BiocGenerics, RUnit, knitr, rtracklayer, utils
SystemRequirements
Enhances
URL	https://github.com/taoshengxu/miRBaseConverter
BugReports	https://github.com/taoshengxu/miRBaseConverter/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	miRBaseConverter_1.4.3.tar.gz
Windows Binary	miRBaseConverter_1.4.3.zip
Mac OS X 10.11 (El Capitan)	miRBaseConverter_1.4.3.tgz
Source Repository	git clone https://git.bioconductor.org/packages/miRBaseConverter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/miRBaseConverter
Package Short Url	http://bioconductor.org/packages/miRBaseConverter/
Package Downloads Report	Download Stats