methInheritSim

DOI: 10.18129/B9.bioc.methInheritSim    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see methInheritSim.

Simulating Whole-Genome Inherited Bisulphite Sequencing Data

Bioconductor version: 3.7

Simulate a multigeneration methylation case versus control experiment with inheritance relation using a real control dataset.

Author: Pascal Belleau, Astrid Deschênes and Arnaud Droit

Maintainer: Pascal Belleau <pascal_belleau at hotmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("methInheritSim")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("methInheritSim")

 

HTML	R Script	Simulating Whole-Genome Inherited Bisulphite Sequencing Data
PDF		Reference Manual
Text		README
Text		NEWS

Details

biocViews	BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome
Version	1.2.0
License	Artistic-2.0
Depends	R (>= 3.4)
Imports	methylKit, GenomicRanges, GenomeInfoDb, parallel, BiocGenerics, S4Vectors, methods, stats, IRanges, msm
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, RUnit, methylInheritance
SystemRequirements
Enhances
URL	https://github.com/belleau/methInheritSim
BugReports	https://github.com/belleau/methInheritSim/issues
Depends On Me
Imports Me
Suggests Me	methylInheritance
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	methInheritSim_1.2.0.tar.gz
Windows Binary	methInheritSim_1.2.0.zip
Mac OS X 10.11 (El Capitan)	methInheritSim_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/methInheritSim
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/methInheritSim
Package Short Url	http://bioconductor.org/packages/methInheritSim/
Package Downloads Report	Download Stats