DOI: 10.18129/B9.bioc.flowFit    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see flowFit.

Estimate proliferation in cell-tracking dye studies

Bioconductor version: 3.7

This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.

Author: Davide Rambaldi

Maintainer: Davide Rambaldi <davide.rambaldi at gmail.com>

Citation (from within R, enter citation("flowFit")):


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PDF R Script Fitting Functions for Flow Cytometry Data
PDF   Reference Manual


biocViews CellBasedAssays, FlowCytometry, Software
Version 1.18.0
In Bioconductor since BioC 2.13 (R-3.0) (5 years)
License Artistic-2.0
Depends R (>= 2.12.2)
Imports flowCore, flowViz, graphics, kza, methods, minpack.lm, gplots
Suggests flowFitExampleData
BugReports Davide Rambaldi
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package flowFit_1.18.0.tar.gz
Windows Binary flowFit_1.18.0.zip
Mac OS X 10.11 (El Capitan) flowFit_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowFit
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowFit
Package Short Url http://bioconductor.org/packages/flowFit/
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