drawProteins

DOI: 10.18129/B9.bioc.drawProteins    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see drawProteins.

Package to Draw Protein Schematics from Uniprot API output

Bioconductor version: 3.7

This package draws protein schematics from Uniprot API output. From the JSON returned by the GET command, it creates a dataframe from the Uniprot Features API. This dataframe can then be used by geoms based on ggplot2 and base R to draw protein schematics.

Author: Paul Brennan [aut, cre]

Maintainer: Paul Brennan <brennanpincardiff at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("drawProteins")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("drawProteins")

 

HTML	R Script	Using drawProteins
HTML	R Script	Using drawProteins
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	FunctionalPrediction, Proteomics, Software, Visualization
Version	1.0.0
License	MIT + file LICENSE
Depends	R (>= 3.4)
Imports	ggplot2, httr, dplyr
LinkingTo
Suggests	covr, testthat, knitr, rmarkdown, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/brennanpincardiff/drawProteins
BugReports	https://github.com/brennanpincardiff/drawProteins/issues/new
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	drawProteins_1.0.0.tar.gz
Windows Binary	drawProteins_1.0.0.zip
Mac OS X 10.11 (El Capitan)	drawProteins_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/drawProteins
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/drawProteins
Package Short Url	http://bioconductor.org/packages/drawProteins/
Package Downloads Report	Download Stats