cn.farms

DOI: 10.18129/B9.bioc.cn.farms    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see cn.farms.

cn.FARMS - factor analysis for copy number estimation

Bioconductor version: 3.7

This package implements the cn.FARMS algorithm for copy number variation (CNV) analysis. cn.FARMS allows to analyze the most common Affymetrix (250K-SNP6.0) array types, supports high-performance computing using snow and ff.

Author: Andreas Mitterecker, Djork-Arne Clevert

Maintainer: Andreas Mitterecker <mitterecker at bioinf.jku.at>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cn.farms")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cn.farms")

 

PDF	R Script	cn.farms: Manual for the R package
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software
Version	1.28.0
In Bioconductor since	BioC 2.8 (R-2.13) (7.5 years)
License	LGPL (>= 2.0)
Depends	R (>= 3.0), Biobase, methods, ff, oligoClasses, snow
Imports	DBI, affxparser, oligo, DNAcopy, preprocessCore, lattice
LinkingTo
Suggests	pd.mapping250k.sty, pd.mapping250k.nsp, pd.genomewidesnp.5, pd.genomewidesnp.6
SystemRequirements
Enhances
URL	http://www.bioinf.jku.at/software/cnfarms/cnfarms.html
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cn.farms_1.28.0.tar.gz
Windows Binary	cn.farms_1.28.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	cn.farms_1.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cn.farms
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cn.farms
Package Short Url	http://bioconductor.org/packages/cn.farms/
Package Downloads Report	Download Stats