arrayQuality

DOI: 10.18129/B9.bioc.arrayQuality    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see arrayQuality.

Assessing array quality on spotted arrays

Bioconductor version: 3.7

Functions for performing print-run and array level quality assessment.

Author: Agnes Paquet and Jean Yee Hwa Yang <yeehwa at stat.berkeley.edu>

Maintainer: Agnes Paquet <paquetagnes at yahoo.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("arrayQuality")

Documentation

PDF		Reference Manual

Details

biocViews	Microarray, QualityControl, Software, TwoChannel, Visualization
Version	1.58.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 13.5 years)
License	LGPL
Depends	R (>= 2.2.0)
Imports	graphics, grDevices, grid, gridBase, hexbin, limma, marray, methods, RColorBrewer, stats, utils
LinkingTo
Suggests	mclust, MEEBOdata, HEEBOdata
SystemRequirements
Enhances
URL	http://arrays.ucsf.edu/
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	arrayQuality_1.58.0.tar.gz
Windows Binary	arrayQuality_1.58.0.zip
Mac OS X 10.11 (El Capitan)	arrayQuality_1.58.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/arrayQuality
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/arrayQuality
Package Short Url	http://bioconductor.org/packages/arrayQuality/
Package Downloads Report	Download Stats