aroma.light

DOI: 10.18129/B9.bioc.aroma.light    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see aroma.light.

Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types

Bioconductor version: 3.7

Methods for microarray analysis that take basic data types such as matrices and lists of vectors. These methods can be used standalone, be utilized in other packages, or be wrapped up in higher-level classes.

Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [ctb], Aaron Lun [ctb]

Maintainer: Henrik Bengtsson <henrikb at braju.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("aroma.light")

Documentation

PDF		Reference Manual
Text		NEWS

Details

biocViews	Infrastructure, Microarray, MultiChannel, OneChannel, Preprocessing, Software, TwoChannel, Visualization
Version	3.10.0
In Bioconductor since	BioC 1.9 (R-2.4) (12 years)
License	GPL (>= 2)
Depends	R (>= 2.15.2)
Imports	stats, R.methodsS3 (>= 1.7.1), R.oo (>= 1.21.0), R.utils (>= 2.6.0), matrixStats (>= 0.52.2)
LinkingTo
Suggests	princurve (>= 1.1-12)
SystemRequirements
Enhances
URL	https://github.com/HenrikBengtsson/aroma.light http://www.aroma-project.org
BugReports	https://github.com/HenrikBengtsson/aroma.light/issues
Depends On Me
Imports Me	EDASeq, scone
Suggests Me	scran, TIN
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	aroma.light_3.10.0.tar.gz
Windows Binary	aroma.light_3.10.0.zip
Mac OS X 10.11 (El Capitan)	aroma.light_3.10.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/aroma.light
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/aroma.light
Package Short Url	http://bioconductor.org/packages/aroma.light/
Package Downloads Report	Download Stats