Trendy

DOI: 10.18129/B9.bioc.Trendy    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see Trendy.

Breakpoint analysis of time-course expression data

Bioconductor version: 3.7

Trendy implements segmented (or breakpoint) regression models to estimate breakpoints which represent changes in expression for each feature/gene in high throughput data with ordered conditions.

Author: Rhonda Bacher and Ning Leng

Maintainer: Rhonda Bacher <rbacher at ufl.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Trendy")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Trendy")

 

PDF	R Script	Trendy Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	RNASeq, Regression, Software, TimeCourse
Version	1.2.11
License	GPL-3
Depends	R (>= 3.4)
Imports	stats, utils, graphics, grDevices, segmented, gplots, parallel, magrittr, BiocParallel, DT, S4Vectors, SummarizedExperiment, methods, shiny, shinyFiles
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, devtools
SystemRequirements
Enhances
URL	https://github.com/rhondabacher/Trendy
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Trendy_1.2.11.tar.gz
Windows Binary	Trendy_1.2.11.zip
Mac OS X 10.11 (El Capitan)	Trendy_1.2.11.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Trendy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Trendy
Package Short Url	http://bioconductor.org/packages/Trendy/
Package Downloads Report	Download Stats