DOI: 10.18129/B9.bioc.TCGAbiolinksGUI    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see TCGAbiolinksGUI.

"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"

Bioconductor version: 3.7

"TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data. A demo version of GUI is found in"

Author: Tiago Chedraoui Silva <tiagochst at>, Antonio Colaprico <antonio.colaprico at>, Catharina Olsen <colsen at>, Michele Ceccarelli, Gianluca Bontempi <gbonte at>, Benjamin P. Berman <Benjamin.Berman at>, Houtan Noushmehr <houtana at>

Maintainer: Tiago C. Silva <tiagochst at>

Citation (from within R, enter citation("TCGAbiolinksGUI")):


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## try http:// if https:// URLs are not supported


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HTML R Script 1. Introduction
HTML R Script 2. Data menu
HTML 3. Analysis menu
HTML 4. Integrative analysis menu
HTML 5. Cases study
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, DNASeq, DifferentialExpression, DifferentialMethylation, GUI, GeneExpression, GeneRegulation, Genetics, MethylationArray, Network, Pathways, Sequencing, Software, StatisticalMethod
Version 1.6.1
In Bioconductor since BioC 3.5 (R-3.4) (1.5 years)
License GPL (>= 3)
Depends R (>= 3.3.1), shinydashboard (>= 0.5.3),
Imports shiny (>= 0.14.1), downloader (>= 0.4), grid, DT, plotly, readr, maftools, stringr (>= 1.1.0), SummarizedExperiment, ggrepel, data.table, minfi, caret, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation27kmanifest, IlluminaHumanMethylation27kanno.ilmn12.hg19, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICmanifest, shinyFiles (>= 0.6.2), ggplot2 (>= 2.1.0), pathview, ELMER(>= 2.0.0), clusterProfiler, parallel, TCGAbiolinks(>= 2.5.5), shinyjs (>= 0.7), colourpicker, shinyBS (>= 0.61)
Suggests testthat, dplyr, knitr, roxygen2, devtools, rvest, xml2, BiocStyle, animation, pander
Depends On Me
Imports Me
Suggests Me
Links To Me
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