DOI: 10.18129/B9.bioc.RNAinteract    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see RNAinteract.

Estimate Pairwise Interactions from multidimensional features

Bioconductor version: 3.7

RNAinteract estimates genetic interactions from multi-dimensional read-outs like features extracted from images. The screen is assumed to be performed in multi-well plates or similar designs. Starting from a list of features (e.g. cell number, area, fluorescence intensity) per well, genetic interactions are estimated. The packages provides functions for reporting interacting gene pairs, plotting heatmaps and double RNAi plots. An HTML report can be written for quality control and analysis.

Author: Bernd Fischer <b.fischer at dkfz.de>

Maintainer: Bernd Fischer <b.fischer at dkfz.de>

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PDF R Script RNAinteract
PDF   Reference Manual


biocViews CellBasedAssays, Preprocessing, QualityControl, Software, Visualization
Version 1.28.0
In Bioconductor since BioC 2.8 (R-2.13) (7.5 years)
License Artistic-2.0
Depends R (>= 2.12.0), abind, locfit, Biobase
Imports RColorBrewer, ICS, ICSNP, cellHTS2, geneplotter, gplots, grid, hwriter, lattice, latticeExtra, limma, methods, splots(>= 1.13.12)
Depends On Me RNAinteractMAPK
Imports Me
Suggests Me
Links To Me
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Source Package RNAinteract_1.28.0.tar.gz
Windows Binary RNAinteract_1.28.0.zip
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Source Repository git clone https://git.bioconductor.org/packages/RNAinteract
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Package Short Url http://bioconductor.org/packages/RNAinteract/
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