MetaNeighbor

DOI: 10.18129/B9.bioc.MetaNeighbor    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see MetaNeighbor.

Single cell replicability analysis

Bioconductor version: 3.7

MetaNeighbor allows users to quantify cell type replicability across datasets using neighbor voting.

Author: Megan Crow [aut, cre], Sara Ballouz [ctb], Manthan Shah [ctb], Jesse Gillis [aut]

Maintainer: Manthan Shah <shah at cshl.edu>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("MetaNeighbor")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaNeighbor")

 

PDF	R Script	MetaNeighbor user guide
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GO, GeneExpression, MultipleComparison, SingleCell, Software, Transcriptomics
Version	1.0.0
License	MIT + file LICENSE
Depends	R (>= 3.5)
Imports	beanplot (>= 1.2), gplots (>= 3.0.1), RColorBrewer (>= 1.1), stats (>= 3.4), SummarizedExperiment(>= 1.6.5), utils (>= 3.4)
LinkingTo
Suggests	knitr (>= 1.17), rmarkdown (>= 1.6), testthat (>= 1.0.2)
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	MetaNeighbor_1.0.0.tar.gz
Windows Binary	MetaNeighbor_1.0.0.zip
Mac OS X 10.11 (El Capitan)	MetaNeighbor_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/MetaNeighbor
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/MetaNeighbor
Package Short Url	http://bioconductor.org/packages/MetaNeighbor/
Package Downloads Report	Download Stats