Guitar

DOI: 10.18129/B9.bioc.Guitar    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see Guitar.

Guitar

Bioconductor version: 3.7

The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

Author: Jia Meng

Maintainer: Jia Meng <jia.meng at xjtlu.edu.cn>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Guitar")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Guitar")

 

PDF	R Script	Sample Guitar workflow
PDF		Reference Manual
Text		NEWS

Details

biocViews	Alignment, Coverage, DataImport, MethylSeq, QualityControl, RNASeq, Sequencing, Software, SplicedAlignment, Transcription
Version	1.18.0
In Bioconductor since	BioC 3.2 (R-3.2) (3 years)
License	GPL-2
Depends	Rsamtools, GenomicFeatures, rtracklayer, GenomicAlignments, GenomicRanges, ggplot2, grid, IRanges
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Guitar_1.18.0.tar.gz
Windows Binary	Guitar_1.18.0.zip
Mac OS X 10.11 (El Capitan)	Guitar_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Guitar
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Guitar
Package Short Url	http://bioconductor.org/packages/Guitar/
Package Downloads Report	Download Stats