DOI: 10.18129/B9.bioc.GOSim    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GOSim.

Computation of functional similarities between GO terms and gene products; GO enrichment analysis

Bioconductor version: 3.7

This package implements several functions useful for computing similarities between GO terms and gene products based on their GO annotation. Moreover it allows for computing a GO enrichment analysis

Author: Holger Froehlich <frohlich at bit.uni-bonn.de>

Maintainer: Holger Froehlich <frohlich at bit.uni-bonn.de>

Citation (from within R, enter citation("GOSim")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script GOsim
PDF   Reference Manual


biocViews Clustering, GO, Pathways, Software
Version 1.18.0
In Bioconductor since BioC 2.13 (R-3.0) (5 years)
License GPL (>= 2)
Depends GO.db, annotate
Imports org.Hs.eg.db, AnnotationDbi, topGO, cluster, flexmix, RBGL, graph, Matrix, corpcor, Rcpp
LinkingTo Rcpp
Enhances igraph
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GOSim_1.18.0.tar.gz
Windows Binary GOSim_1.18.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) GOSim_1.18.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GOSim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOSim
Package Short Url http://bioconductor.org/packages/GOSim/
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: