GMRP

DOI: 10.18129/B9.bioc.GMRP    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see GMRP.

GWAS-based Mendelian Randomization and Path Analyses

Bioconductor version: 3.7

Perform Mendelian randomization analysis of multiple SNPs to determine risk factors causing disease of study and to exclude confounding variabels and perform path analysis to construct path of risk factors to the disease.

Author: Yuan-De Tan

Maintainer: Yuan-De Tan <tanyuande at gmail.com>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("GMRP")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GMRP")

 

PDF	R Script	Causal Effect Analysis of Risk Factors for Disease with the "GMRP" package
PDF		GMRP-manual.pdf
PDF		Reference Manual

Details

biocViews	Regression, SNP, Sequencing, Software
Version	1.8.1
In Bioconductor since	BioC 3.3 (R-3.3) (2.5 years)
License	GPL (>= 2)
Depends	R (>= 3.3.0), stats, utils, graphics, grDevices, diagram, plotrix, base, GenomicRanges
Imports
LinkingTo
Suggests	BiocStyle, BiocGenerics, VariantAnnotation
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GMRP_1.8.1.tar.gz
Windows Binary	GMRP_1.8.1.zip
Mac OS X 10.11 (El Capitan)	GMRP_1.8.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GMRP
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GMRP
Package Short Url	http://bioconductor.org/packages/GMRP/
Package Downloads Report	Download Stats