DOI: 10.18129/B9.bioc.FunciSNP    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see FunciSNP.

Integrating Functional Non-coding Datasets with Genetic Association Studies to Identify Candidate Regulatory SNPs

Bioconductor version: 3.7

FunciSNP integrates information from GWAS, 1000genomes and chromatin feature to identify functional SNP in coding or non-coding regions.

Author: Simon G. Coetzee <simon at> and Houtan Noushmehr, PhD <houtan at>

Maintainer: Simon G. Coetzee <simon at>

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biocViews Annotation, DataImport, DataRepresentation, Infrastructure, SequenceMatching, Software
Version 1.24.0
In Bioconductor since BioC 2.11 (R-2.15) (6 years)
License GPL-3
Depends R (>= 2.14.0), ggplot2, TxDb.Hsapiens.UCSC.hg19.knownGene,
Imports methods, BiocGenerics, Biobase, S4Vectors, IRanges, GenomicRanges, Rsamtools(>= 1.6.1), rtracklayer(>= 1.14.1), ChIPpeakAnno(>= 2.2.0), VariantAnnotation, plyr, snpStats, ggplot2 (>= 0.9.0), reshape (>= 0.8.4), scales
Enhances parallel
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