EasyqpcR

DOI: 10.18129/B9.bioc.EasyqpcR    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see EasyqpcR.

EasyqpcR for low-throughput real-time quantitative PCR data analysis

Bioconductor version: 3.7

This package is based on the qBase algorithms published by Hellemans et al. in 2007. The EasyqpcR package allows you to import easily qPCR data files as described in the vignette. Thereafter, you can calculate amplification efficiencies, relative quantities and their standard errors, normalization factors based on the best reference genes choosen (using the SLqPCR package), and then the normalized relative quantities, the NRQs scaled to your control and their standard errors. This package has been created for low-throughput qPCR data analysis.

Author: Le Pape Sylvain

Maintainer: Le Pape Sylvain <sylvain.le.pape at univ-poitiers.fr>

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EasyqpcR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("EasyqpcR")

 

PDF	R Script	EasyqpcR
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneExpression, Software, qPCR
Version	1.21.0
In Bioconductor since	BioC 2.11 (R-2.15) (6 years)
License	GPL (>=2)
Depends
Imports	plyr, matrixStats, plotrix, gWidgetsRGtk2
LinkingTo
Suggests	SLqPCR, qpcrNorm, qpcR, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	EasyqpcR_1.21.0.tar.gz
Windows Binary	EasyqpcR_1.21.0.zip
Mac OS X 10.11 (El Capitan)	EasyqpcR_1.21.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/EasyqpcR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/EasyqpcR
Package Short Url	http://bioconductor.org/packages/EasyqpcR/
Package Downloads Report	Download Stats