DOI: 10.18129/B9.bioc.DEScan2    

This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see DEScan2.

Differential Enrichment Scan 2

Bioconductor version: 3.7

Integrated peak and differential caller, specifically designed for broad epigenomic signals.

Author: Dario Righelli [aut, cre], John Koberstein [aut], Bruce Gomes [aut], Nancy Zhang [aut], Claudia Angelini [aut], Lucia Peixoto [aut], Davide Risso [aut]

Maintainer: Dario Righelli <dario.righelli at>

Citation (from within R, enter citation("DEScan2")):


To install this package, start R and enter:

## try http:// if https:// URLs are not supported


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script DEScan2 Vignette
PDF   Reference Manual
Text   NEWS


biocViews Coverage, Epigenetics, PeakDetection, Sequencing, Software
Version 1.0.0
License Artistic-2.0
Depends R (>= 3.5), GenomicRanges
Imports BiocGenerics, ChIPpeakAnno, data.table, DelayedArray, GenomeInfoDb, GenomicAlignments, glue, IRanges, plyr, Rcpp (>= 0.12.13), rtracklayer, S4Vectors, SummarizedExperiment, tools, utils
LinkingTo Rcpp, RcppArmadillo
Suggests BiocStyle, knitr, rmarkdown, testthat, edgeR, limma, EDASeq, RUVSeq, RColorBrewer, statmod
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package DEScan2_1.0.0.tar.gz
Windows Binary (32- & 64-bit)
Mac OS X 10.11 (El Capitan) DEScan2_1.0.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
Package Short Url
Package Downloads Report Download Stats

Documentation »


R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: