getShortestPathSif {paxtoolsr} | R Documentation |
Get the shortest between two IDs (HGNC or CHEBI)
getShortestPathSif(sif, idA, idB, mode = c("all", "out", "in"), weights = NULL, filterFun, ...)
sif |
a SIF network |
idA |
HGNC or CHEBI (CHEBI:XXXXX) ID |
idB |
HGNC or CHEBI (CHEBI:XXXXX) ID |
mode |
see shortest_paths() in igraph |
weights |
see shortest_paths() in igraph |
filterFun |
a function to filter multiple paths of the same length |
... |
additional arguments passed on to filterFun |
a data.frame representing a SIF network