downloadPc2 {paxtoolsr} | R Documentation |
Download Pathway Commons files (uses menu and cache)
downloadPc2(selectedFileName = NULL, destDir = NULL, returnNames = NULL, version = "current", verbose = FALSE)
selectedFileName |
a string, a name of a file to skip the the interactive selection |
destDir |
a string, the destination directory for the file to be downloaded (Default: NULL). If NULL, then file will be downloaded to cache directory file.path(Sys.getenv("HOME"), ".paxtoolsRCache") |
returnNames |
return a vector of names matching the given regular expression |
version |
a version number for a previous version of Pathway Commons data; versions 3 and above |
verbose |
a flag to display debugging information (Default: FALSE) |
an R object using one of the read* methods provided in this package corresponding to the file downloaded
## Not run: downloadPc2() downloadPc2(returnNames="ext.*sif") downloadPc2("PathwayCommons.8.inoh.GSEA.hgnc.gmt.gz", verbose=TRUE) ## End(Not run)