InternalFunctions {EventPointer} | R Documentation |
Internal functions used by EventPointer in the different steps of the algorithm
annotateEvents(Events, PSR_Gene, Junc_Gene, Gxx) AnnotateEvents_RNASeq(Events) ClassifyEvents(SG, Events) estimateAbsoluteConc(Signal1, Signal2, SignalR, lambda) findTriplets(randSol, tol = 1e-08) GetCounts(Events, sg_txiki, type = "counts") getEventPaths(Events, SG) GetIGVPaths(EventInfo, SG_Edges) getPSI(ExFit) getPSI_RNASeq(Result) getRandomFlow(Incidence, ncol = 1) IHsummarization(Pv1, t1, Pv2, t2, coherence = "Opposite") pdist2(X, Y) PrepareCountData(Result) PrepareProbes(Probes, Class) PrepareOutput(Result, Final) SG_Info(SG_Gene) WriteGTF(PATH, Data, Probes, Paths) WriteGTF_RNASeq(PATH, Data, Paths) flat2Cdf(file, chipType, tags = NULL, rows = 2560, cols = 2560, verbose = 10, xynames = c("X", "Y"), gcol = 5, ucol = 6, splitn = 4, col.class = c("integer", "character")[c(1, 1, 1, 2, 2, 2)], ...)
Internal outputs