hc_FC_DensityPlot {DAPAR}R Documentation

Density plots of FC values

Description

This function show the density plots of Fold Change (the same as calculated by limma) for a list of the comparisons of conditions in a differnetial analysis.

Usage

hc_FC_DensityPlot(df_FC, threshold_LogFC = 0)

Arguments

df_FC

A dataframe that contains the FC values

threshold_LogFC

The threshold on log(Fold Change) to distinguish between differential and non-differential data

Value

A highcharts density plot

Author(s)

Samuel Wieczorek

Examples

require(DAPARdata)
data(Exp1_R25_pept)
obj <- Exp1_R25_pept[1:1000]
keepThat <- mvFilterGetIndices(obj, 'wholeMatrix', ncol(obj))
obj <- mvFilterFromIndices(obj, keepThat)
qData <- Biobase::exprs(obj)
sTab <- Biobase::pData(obj)
limma <- limmaCompleteTest(qData,sTab)
hc_FC_DensityPlot(limma$FC)

[Package DAPAR version 1.12.11 Index]