Create rapid visualizations of RNAseq data in R


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Documentation for package ‘vidger’ version 1.0.0

Help Pages

df.cuff A 'cuffdiff' example dataset
df.deseq A 'DESeq2' example dataset
df.edger A 'edgeR' example dataset
vsBoxPlot Box plot for log10(FPKM or CPM) distributions
vsDEGMatrix Differential gene expression matrix
vsFourWay Four-Way plot for comparison of log fold changes in a multiple factor RNA seq experiment from different analytical objects
vsMAMatrix MA plot matrix from log2 fold changes and -log10(p-values)
vsMAPlot MA plot from mean expression and log fold changes from different analytical objects
vsScatterMatrix Scatter plot matrix of log10(FPKM or CPM) values
vsScatterPlot Scatter plot of log10(FPKM or CPM) values
vsVolcano Volcano plot from log2 fold changes and -log10(p-values)
vsVolcanoMatrix Volcano plot matrix from log2 fold changes and -log10(p-values)