.Signet |
An S4 class to represent a pathway and the results of the associated simulated annealing run. |
.SignetList |
An S4 class to represent a list of "Signet" objects. |
initialize-method |
An S4 class to represent a pathway and the results of the associated simulated annealing run. |
initialize-method |
An S4 class to represent a list of "Signet" objects. |
kegg_human |
Pathway examples. See 'browseVignettes("signet")' to see how to prepare the pathways for running simulated annealing. |
nullDist |
Null distribution |
plot-method |
An S4 class to represent a pathway and the results of the associated simulated annealing run. |
scores |
Example of gene selection scores. |
searchSubnet |
Search for a high scoring subnetwork |
show-method |
An S4 class to represent a pathway and the results of the associated simulated annealing run. |
signet |
Selection Inference in Gene NETworks |
Signet-class |
An S4 class to represent a pathway and the results of the associated simulated annealing run. |
SignetList-class |
An S4 class to represent a list of "Signet" objects. |
summary-method |
An S4 class to represent a pathway and the results of the associated simulated annealing run. |
summary-method |
An S4 class to represent a list of "Signet" objects. |
testSubnet |
Test the significance of high-scoring subnetworks found using simulated annealing. |
writeXGMML |
Write Cytoscape input file |
[-method |
An S4 class to represent a list of "Signet" objects. |
[[ |
An S4 class to represent a list of "Signet" objects. |
[[-method |
An S4 class to represent a list of "Signet" objects. |