Access HDF5 content from h5serv


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Documentation for package ‘rhdf5client’ version 1.2.3

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dataset H5S_source identifies an HDF5/HSDS server and manages some metadata about contents
dim-method HDF Server content is assumed transposed relative to R matrix layout
dimnames-method dimnames not stored with H5S_source as of Jan 2018
domains HSDS server domains accessor
domains-method HSDS server domains accessor
dsmeta list information about datasets available in an H5S_source
getDatasetAttrs getDatasetAttrs from hsds server
getDatasetSlice getDatasetSlice from hsds server
getDatasetUUIDs getDatasetUUIDs from hsds server
getDims getDims from hsds server
getHRDF getHRDF from hsds server
getReq list information about server content available in an H5S_source hsds instance
groups HDF5 server data groups accessor
groups-method HDF5 server data groups accessor
groups-method selective group metadata accessor
H5S_Array create H5S_Array instance given url (filepath) and entity (host) name
H5S_Array-class extension of DelayedArray for HDF Server content
H5S_ArraySeed-class H5S_Array for HDF Server content
H5S_dataset extract elements from H5S_dataset
H5S_dataset-class extract elements from H5S_dataset
H5S_dataset-method extract elements from H5S_dataset
H5S_dataset2 H5S_dataset2 for datasets in hsds server
H5S_Matrix-class extension of DelayedMatrix for HDF Server content
H5S_source H5S_source identifies an HDF5/HSDS server and manages some metadata about contents
H5S_source-class H5S_source identifies an HDF5/HSDS server and manages some metadata about contents
hsdsInfo HSDS server get request accessor
hsdsInfo-method HSDS server get request accessor
HSDS_Matrix simplify construction of DelayedMatrix from url and path in HSDS
internalDim acquire internal HDF5 dimension information for matrix
isplit isplit converts a numeric vector into a list of sequences for compact reexpression
links access for link metadata for HDF5 server groups
links-method access for link metadata for HDF5 server groups
setPath set path for hsds server resource
setPath-method set path for hsds server resource
sproc isplit converts a numeric vector into a list of sequences for compact reexpression
targets provide the full URLs for link members
transfermode<- replace transfer mode
transfermode<--method replace transfer mode
URL_h5serv manage h5serv URL
URL_hsds manage hsds URL
[-method extract elements from H5S_dataset
[-method extract elements from H5S_dataset
[[-method H5S_source identifies an HDF5/HSDS server and manages some metadata about contents