A B C D E F G H I J K L M N O P Q R S T U V W
addObjectAttrs | Set attributes to an object |
addTCGAdata | Creates a UI set with options to add data from TCGA/Firebrowse |
analysesPlotSet | Set of functions to plot differential analyses |
analysesServer | Server logic |
analysesTableSet | Set of functions to render data table for differential analyses |
analysesUI | User interface |
appendNewGroups | Append new groups to already existing groups |
appServer | Server logic |
appUI | User interface |
areSplicingEvents | Check if string identifies splicing events |
articleUI | Return the interface to display an article |
ASquantFileInput | File input for alternative splicing quantification |
assignColours | Assign colours to groups |
assignValuePerPatient | Assign average sample values to their corresponding patients |
assignValuePerSubject | Assign average sample values to their corresponding patients |
basicStats | Basic statistics performed on data |
blendColours | Blend two HEX colours |
browserHistory | Enable history navigation |
bsModal2 | Modified version of 'shinyBS::bsModal' |
calculateInclusionLevels | Calculate inclusion levels using alternative splicing event annotation and junction quantification for many samples |
calculateLoadingsContribution | Calculate the contribution of PCA loadings to the selected principal components |
checkFileFormat | Checks the format of a file |
checkFirebrowse | Return an user interface depending on the status of the Firebrowse API |
checkIntegrity | Compute the 32-byte 'MD5' hashes of one or more files and check with given 'md5' file |
checkSurvivalInput | Prepare survival terms in case of valid input |
closeProgress | Close the progress even if there's an error |
clusterICAset | Server logic for clustering ICA data |
clusterSet | Server logic for clustering PCA data |
colourInputMod | Modified colour input with 100% width |
correlateGEandAS | Correlate gene expression data against alternative splicing quantification |
correlationServer | Server logic |
correlationUI | User interface |
createDataTab | Render a specific data tab (including data table and related interface) |
createDensitySparklines | Create density sparklines for inclusion levels |
createEventPlotting | Create plot for events |
createGroup | Prepare to create group according to specific details |
createGroupByAttribute | Split elements into groups based on a given column of a dataset |
createGroupByColumn | Split elements into groups based on a given column of a dataset |
createGroupById | Create groups based on given row indexes or identifiers |
createGroupFromInput | Set new groups according to the user input |
createJunctionsTemplate | Creates a template of alternative splicing junctions |
createOptimalSurvData | Create survival data based on a PSI cutoff |
createSparklines | Create sparkline charts to be used in a data table |
dataServer | Server logic |
dataUI | User interface |
diffAnalyses | Perform statistical analyses |
diffAnalysis | Perform statistical analyses |
diffExpressionEventServer | Server logic |
diffExpressionEventUI | User interface |
diffExpressionServer | Server logic |
diffExpressionSet | Set of functions to perform differential analyses |
diffExpressionTableServer | Server logic |
diffExpressionTableUI | User interface |
diffExpressionUI | User interface |
diffSplicingEventServer | Server logic |
diffSplicingEventUI | User interface |
diffSplicingServer | Server logic |
diffSplicingSet | Set of functions to perform differential analyses |
diffSplicingTableServer | Server logic |
diffSplicingTableUI | User interface |
diffSplicingUI | User interface |
dimReductionServer | Server logic |
dimReductionUI | User interface |
disableTab | Enable or disable a tab from the 'navbar' |
display | Display characters in the command-line |
downloadFiles | Download files to a given directory |
enableTab | Enable or disable a tab from the 'navbar' |
endProcess | Signal the program that a process has ended |
ensemblToUniprot | Convert an Ensembl identifier to the respective UniProt identifier |
errorAlert | Show or remove an alert |
errorDialog | Alert in the style of a dialogue box with a button |
errorModal | Style and show a modal |
escape | Escape symbols for use in regular expressions |
eventPlotOptions | Options for event plotting |
export_highcharts | Add an exporting feature to a 'highcharts' object |
fileBrowser | Interactive folder selection using a native dialogue |
fileBrowserInput | File browser input |
filterGroups | Filter groups with less data points than the threshold |
findASeventsFromGene | Find splicing events based on given genes |
firebrowseServer | Server logic |
firebrowseUI | User interface |
fisher | Perform Fisher's exact test and return interface to show the results |
fligner | Perform Fligner-Killeen test and return interface to show the results |
geneExprFileInput | File input for gene expression |
geneExprSurvSet | Logic set to perform survival analysis based on gene expression cut-offs |
geNormalisationFilteringInterface | Interface to normalise and filter gene expression |
geNormalisationFilteringServer | Server logic |
geNormalisationFilteringUI | User interface |
getActiveDataset | Get or set globally accessible elements |
getAnnotationName | Get or set globally accessible elements |
getASevent | Get or set globally accessible elements |
getASevents | Get or set globally accessible elements |
getAssemblyVersion | Get or set globally accessible elements |
getAttributesTime | Retrieve the time for given columns in a clinical dataset |
getAutoNavigation | Get or set globally accessible elements |
getCategories | Get or set globally accessible elements |
getCategory | Get or set globally accessible elements |
getCategoryData | Get or set globally accessible elements |
getClinicalData | Get or set globally accessible elements |
getClinicalDataForSurvival | Retrieve clinical data based on attributes required for survival analysis |
getClinicalMatchFrom | Get or set clinical matches from a given data type |
getColumnsTime | Retrieve the time for given columns in a clinical dataset |
getCores | Get or set globally accessible elements |
getCorrelation | Get or set globally accessible elements |
getData | Get global data |
getDataRows | Get rows of a data frame between two row indexes |
getDifferentialExpression | Get or set differential expression' elements for a data category |
getDifferentialExpressionColumns | Get or set differential expression' elements for a data category |
getDifferentialExpressionFiltered | Get or set differential expression' elements for a data category |
getDifferentialExpressionResetPaging | Get or set differential expression' elements for a data category |
getDifferentialExpressionSurvival | Get or set differential expression' elements for a data category |
getDifferentialSplicing | Get or set differential splicing' elements for a data category |
getDifferentialSplicingColumns | Get or set differential splicing' elements for a data category |
getDifferentialSplicingFiltered | Get or set differential splicing' elements for a data category |
getDifferentialSplicingResetPaging | Get or set differential splicing' elements for a data category |
getDifferentialSplicingSurvival | Get or set differential splicing' elements for a data category |
getDownloadsFolder | Get the Downloads folder of the user |
getEvent | Get or set globally accessible elements |
getFirebrowseCohorts | Query the Firebrowse web API for available cohorts |
getFirebrowseDataTypes | Get data types available from Firebrowse |
getFirebrowseDateFormat | Returns the date format used by the Firebrowse web API |
getFirebrowseDates | Query the Firebrowse web API for the available data datestamps |
getFirehoseCohorts | Query the Firebrowse web API for available cohorts |
getFirehoseDataTypes | Get data types available from Firebrowse |
getFirehoseDates | Query the Firebrowse web API for the available data datestamps |
getGeneExpression | Get or set globally accessible elements |
getGenes | Get or set globally accessible elements |
getGenesFromSplicingEvents | Retrieve genes based on given alternative splicing events |
getGlobal | Get or set globally accessible elements |
getGroupIndependenceTesting | Get or set globally accessible elements |
getGroups | Get or set groups |
getGTExTissues | Get GTEx tissues from given GTEx sample attributes |
getGtexTissues | Get GTEx tissues from given GTEx sample attributes |
getHidden | Get or set hidden globally accessible elements |
getHighlightedPoints | Get or set points or regions for plots |
getICA | Get or set globally accessible elements |
getInclusionLevels | Get or set globally accessible elements |
getJunctionQuantification | Get or set globally accessible elements |
getLabelledPoints | Get or set points or regions for plots |
getMatchingSamples | Get samples matching the given patients |
getNumerics | Convert a column to numeric if possible and ignore given columns composed of lists |
getPatientAttributes | Get or set globally accessible elements |
getPatientFromSample | Get patients from given samples |
getPatientId | Get or set globally accessible elements |
getPCA | Get or set globally accessible elements |
getPrecision | Get or set globally accessible elements |
getPSIperPatient | Assign average sample values to their corresponding patients |
getSampleAttributes | Get or set globally accessible elements |
getSampleFromPatient | Get samples matching the given patients |
getSampleFromSubject | Get samples matching the given patients |
getSampleId | Get or set globally accessible elements |
getSampleInfo | Get or set globally accessible elements |
getSelectedGroups | Group selection |
getSelectedPoints | Get or set points or regions for plots |
getServerFunctions | Matches server functions from a given loader |
getSignificant | Get or set globally accessible elements |
getSpecies | Get or set globally accessible elements |
getSplicingEventCoordinates | Returns the coordinates of interest for a given event type |
getSplicingEventFromGenes | Retrieve alternative splicing events based on given genes |
getSplicingEventTypes | Splicing event types available |
getSubjectFromSample | Get patients from given samples |
getTCGAcohorts | Query the Firebrowse web API for available cohorts |
getTCGAdates | Query the Firebrowse web API for the available data datestamps |
getUiFunctions | Matches user interface (UI) functions from a given loader |
getURLtoDownload | Get or set globally accessible elements |
getValidEvents | Filters the events with valid elements according to the given validator |
getValuePerPatient | Assign average sample values to their corresponding patients |
getValuePerSubject | Assign average sample values to their corresponding patients |
getZoom | Get or set points or regions for plots |
ggplotAuxServer | Logic set to create an interactive ggplot |
ggplotServer | Logic set to create an interactive ggplot |
ggplotTooltip | Create the interface for the tooltip of a plot |
ggplotUI | Interface for interactive ggplot |
globalSelectize | Create a selectize input available from any page |
groupByAttribute | User interface to group by attribute |
groupByExpression | User interface to group by subset expression |
groupByGrep | User interface to group by grep expression |
groupById | User interface to group by row |
groupManipulation | Logic server to manipulate data grouping |
groupManipulationInput | Interface to manipulate data grouping |
groupPerElem | Assign one group to each element |
groupPerPatient | Assign one group to each element |
groupPerSample | Assign one group to each element |
groupsServer | Server logic |
groupsServerOnce | Server function for data grouping (one call) |
groupsUI | User interface |
gtexDataServer | Server logic |
gtexDataUI | User interface |
hchart.survfit | Plot survival curves using Highcharts |
hc_scatter | Create scatter plot |
helpServer | Server logic |
helpUI | User interface |
icaServer | Server logic |
icaUI | User interface |
inclusionLevelsInterface | Interface to quantify alternative splicing |
inclusionLevelsServer | Server logic |
inclusionLevelsUI | User interface |
infoModal | Style and show a modal |
infoServer | Server logic |
infoUI | User interface |
inlineDialog | Alert in the style of a dialogue box with a button |
insideFile | Get psichomics file inside a given directory |
is.whole | Check if a number is whole |
isFile | Check if files exist |
isFirebrowseUp | Check whether the Firebrowse web API is running |
isFirehoseUp | Check whether the Firebrowse web API is running |
isRStudioServer | Check if running in RStudio Server |
joinEventsPerType | Full outer join all given events based on select columns |
junctionString | String used to search for matches in a junction quantification file |
kruskal | Perform Kruskal's test and return interface to show the results |
labelBasedOnCutoff | Label groups based on a given cutoff |
levene | Perform Levene's test and return interface to show the results |
leveneTest | Levene's test |
linkToArticle | Interface that directs users to original article |
linkToRunJS | Link to run arbitrary JavaScript code |
listAllAnnotations | List alternative splicing annotation files available, as well as custom annotation |
listSplicingAnnotations | List the alternative splicing annotation files available |
loadAnnotation | Load alternative splicing annotation from 'AnnotationHub' |
loadBy | Check if a given function should be loaded by the calling module |
loadCustomSplicingAnnotationSet | Set of functions to load a custom alternative splicing annotation |
loadedDataModal | Create a modal warning the user of already loaded data |
loadFile | Loads a file according to its format |
loadFileFormats | Loads file formats |
loadFirebrowseData | Downloads and processes data from the Firebrowse web API and loads it into R |
loadFirebrowseFolders | Load Firebrowse folders |
loadFirehoseData | Downloads and processes data from the Firebrowse web API and loads it into R |
loadFirehoseFolders | Load Firebrowse folders |
loadGeneExpressionSet | Set of functions to load splicing quantification |
loadGtexData | Load GTEx data |
loadGtexDataShiny | Shiny wrapper to load GTEx data |
loadGTExFile | Load GTEx file |
loadGtexFile | Load GTEx file |
loadLocalFiles | Load local files |
loadRequiredData | Missing information modal template |
loadSplicingQuantificationSet | Set of functions to load splicing quantification |
loadSRAproject | Download and load SRA projects |
loadTCGAdata | Downloads and processes data from the Firebrowse web API and loads it into R |
loadTCGAfolders | Load Firebrowse folders |
loadTCGAsampleMetadata | Prepare TCGA sample metadata from loaded datasets |
localDataServer | Server logic |
localDataUI | User interface |
matchGroupPatientsAndSamples | Match patients and samples in a group |
matchSplicingEventsWithGenes | Match splicing events with respective genes |
missingDataGuide | Missing information modal template |
missingDataModal | Missing information modal template |
modTabPanel | Modified 'tabPanel' function to show icon and title |
navSelectize | Create a special selectize input in the navigation bar |
noinfo | Interface when no information could be retrieved |
normaliseGeneExpression | Filter and normalise gene expression |
operateOnGroups | Set operations on groups |
optimalPSIcutoff | Calculate optimal data cutoff that best separates survival curves |
optimalSurvivalCutoff | Calculate optimal data cutoff that best separates survival curves |
optimSurvDiffSet | Optimal survival difference given an inclusion level cutoff for a specific alternative splicing event |
parseCategoricalGroups | Parse categorical columns in a data frame |
parseDateResponse | Parse the date from a response |
parseFirebrowseMetadata | Query the Firebrowse web API for metadata |
parseFirehoseMetadata | Query the Firebrowse web API for metadata |
parseMatsA3SS | Parse junctions of an alternative splicing event from MATS according to event type |
parseMatsA5SS | Parse junctions of an alternative splicing event from MATS according to event type |
parseMatsAFE | Parse junctions of an alternative splicing event from MATS according to event type |
parseMatsALE | Parse junctions of an alternative splicing event from MATS according to event type |
parseMatsAnnotation | Get events from alternative splicing annotation |
parseMatsEvent | Parse alternative splicing events from MATS |
parseMatsGeneric | Parse junctions of an alternative splicing event from MATS according to event type |
parseMatsMXE | Parse junctions of an alternative splicing event from MATS according to event type |
parseMatsRI | Parse junctions of an alternative splicing event from MATS according to event type |
parseMatsSE | Parse junctions of an alternative splicing event from MATS according to event type |
parseMisoA3SS | Parse junctions of an event from MISO according to event type |
parseMisoA5SS | Parse junctions of an event from MISO according to event type |
parseMisoAFE | Parse junctions of an event from MISO according to event type |
parseMisoALE | Parse junctions of an event from MISO according to event type |
parseMisoAnnotation | Get events from alternative splicing annotation |
parseMisoEvent | Parse an alternative splicing event from MISO |
parseMisoEventID | Match MISO's splicing event IDs with the IDs present in the alternative splicing annotation file and get events in a data frame |
parseMisoGeneric | Parse junctions of an event from MISO according to event type |
parseMisoId | Parse MISO's alternative splicing event identifier |
parseMisoMXE | Parse junctions of an event from MISO according to event type |
parseMisoRI | Parse junctions of an event from MISO according to event type |
parseMisoSE | Parse junctions of an event from MISO according to event type |
parseMisoTandemUTR | Parse junctions of an event from MISO according to event type |
parseSampleGroups | Return the type of a given sample |
parseSplicingEvent | Parse an alternative splicing event based on a given identifier |
parseSuppaA3SS | Parse junctions of an event from SUPPA |
parseSuppaA5SS | Parse junctions of an event from SUPPA |
parseSuppaAFE | Parse junctions of an event from SUPPA |
parseSuppaALE | Parse junctions of an event from SUPPA |
parseSuppaAnnotation | Get events from alternative splicing annotation |
parseSuppaEvent | Parses splicing events of a specific event type from SUPPA |
parseSuppaGeneric | Parse junctions of an event from SUPPA |
parseSuppaMXE | Parse junctions of an event from SUPPA |
parseSuppaRI | Parse junctions of an event from SUPPA |
parseSuppaSE | Parse junctions of an event from SUPPA |
parseTCGAmetadata | Query the Firebrowse web API for metadata |
parseTCGAsampleInfo | Parse sample information from TCGA samples |
parseTcgaSampleInfo | Parse sample information from TCGA samples |
parseUniprotXML | Parse XML from UniProt's RESTful service |
parseUrlsFromFirebrowseResponse | Retrieve URLs from a response to a Firebrowse data query |
parseUrlsFromFirehoseResponse | Retrieve URLs from a response to a Firebrowse data query |
parseValidFile | Parse file given a list of file formats |
parseVastToolsA3SS | Parse junctions of an event from VAST-TOOLS according to event type |
parseVastToolsA5SS | Parse junctions of an event from VAST-TOOLS according to event type |
parseVastToolsAnnotation | Get events from alternative splicing annotation |
parseVastToolsEvent | Parses an alternative splicing event from VAST-TOOLS |
parseVastToolsRI | Parse junctions of an event from VAST-TOOLS according to event type |
parseVastToolsSE | Parse junctions of an event from VAST-TOOLS according to event type |
patientMultiMatchWarning | Helper text to explain what happens when a patient matches multiple samples when performing survival analysis |
pcaServer | Server logic |
pcaUI | User interface |
performICA | Perform independent component analysis after processing missing values |
performPCA | Perform principal component analysis after processing missing values |
plot.GEandAScorrelation | Plot correlations |
plotClusters | Add clusters to 'highchart' object |
plotCorrelation | Plot correlations |
plotDensity | Plot distribution through a density plot |
plotDistribution | Plot distribution through a density plot |
plotGroupIndependence | Plot -log10(p-values) of the results obtained after multiple group independence testing |
plotICA | Create multiple scatterplots from ICA |
plotPCA | Create a scatterplot from a PCA object |
plotPointsStyle | Interface to modify the style of the plot points |
plotProtein | Plot protein features |
plotSingleICA | Create a scatterplot for ICA |
plotSurvivalCurves | Plot survival curves |
plottableXranges | HTML code to plot a X-ranges series |
plotTranscripts | Plot transcripts |
plotVariance | Create the explained variance plot |
prepareAnnotationFromEvents | Prepare annotation from alternative splicing events |
prepareEventPlotOptions | Prepare event plot options |
prepareFileBrowser | Prepare file browser dialogue and update the input's value accordingly to selected file or directory |
prepareFirebrowseArchives | Prepares Firebrowse archives in a given directory |
prepareFirehoseArchives | Prepares Firebrowse archives in a given directory |
prepareGeneQuant | Prepare files to be loaded into psichomics |
prepareGeneQuantSTAR | Prepare files to be loaded into psichomics |
prepareJunctionQuant | Prepare files to be loaded into psichomics |
prepareJunctionQuantSTAR | Prepare files to be loaded into psichomics |
prepareSRAmetadata | Prepare files to be loaded into psichomics |
prepareTCGAarchives | Prepares Firebrowse archives in a given directory |
prepareWordBreak | Create word break opportunities (for HTML) using given characters |
processButton | Style button used to initiate a process |
processDatasetNames | Process dataset names |
processSurvData | Process survival data to calculate survival curves |
processSurvival | Check if survival analyses successfully completed or returned errors |
processSurvTerms | Process survival curves terms to calculate survival curves |
psichomics | Start graphical interface of psichomics |
pubmedUI | Return the interface of relevant PubMed articles for a given gene |
quantifySplicing | Quantify alternative splicing events |
quantifySplicingSet | Set of functions to quantify alternative splicing |
queryEnsembl | Query the Ensembl REST API |
queryEnsemblByEvent | Query information from Ensembl by a given alternative splicing event |
queryEnsemblByGene | Query information from Ensembl by a given gene |
queryFirebrowseData | Query the Firebrowse web API for TCGA data |
queryFirehoseData | Query the Firebrowse web API for TCGA data |
queryPubMed | Query the PubMed REST API |
queryUniprot | Query the UniProt REST API |
readAnnot | Read custom or remote annotation |
readFile | Load local file |
recountDataServer | Server logic |
recountDataUI | User interface |
reduceDimensionality | Reduce dimensionality after processing missing values from data frame |
removeAlert | Show or remove an alert |
renameDuplicated | Rename vector to avoid duplicated values with another vector |
renameGroups | Rename duplicated names from a new group |
renderDataTableSparklines | Render a data table with sparkline HTML elements |
renderGeneticInfo | Render genetic information |
renderGroupInterface | Render group interface |
renderProteinInfo | Render protein information |
rm.null | Filter NULL elements from vector or list |
roundDigits | Round by the given number of digits |
roundMaxUp | Round down/up the minimum/maximum value |
roundMinDown | Round down/up the minimum/maximum value |
rowMeans | Calculate mean for each row of a matrix |
rowVars | Calculate variance for each row of a matrix |
selectGroupsServer | Group selection |
selectGroupsUI | Group selection |
selectizeGeneInput | Create input to select a gene |
setActiveDataset | Get or set globally accessible elements |
setAnnotationName | Get or set globally accessible elements |
setASevent | Get or set globally accessible elements |
setAssemblyVersion | Get or set globally accessible elements |
setAutoNavigation | Get or set globally accessible elements |
setCategory | Get or set globally accessible elements |
setClinicalMatchFrom | Get or set clinical matches from a given data type |
setCores | Get or set globally accessible elements |
setCorrelation | Get or set globally accessible elements |
setData | Get or set globally accessible elements |
setDataTable | Get or set globally accessible elements |
setDifferentialExpression | Get or set differential expression' elements for a data category |
setDifferentialExpressionColumns | Get or set differential expression' elements for a data category |
setDifferentialExpressionFiltered | Get or set differential expression' elements for a data category |
setDifferentialExpressionResetPaging | Get or set differential expression' elements for a data category |
setDifferentialExpressionSurvival | Get or set differential expression' elements for a data category |
setDifferentialSplicing | Get or set differential splicing' elements for a data category |
setDifferentialSplicingColumns | Get or set differential splicing' elements for a data category |
setDifferentialSplicingFiltered | Get or set differential splicing' elements for a data category |
setDifferentialSplicingResetPaging | Get or set differential splicing' elements for a data category |
setDifferentialSplicingSurvival | Get or set differential splicing' elements for a data category |
setEvent | Get or set globally accessible elements |
setFirebrowseData | Set data from Firebrowse |
setGlobal | Get or set globally accessible elements |
setGroupIndependenceTesting | Get or set globally accessible elements |
setGroups | Get or set groups |
setHidden | Get or set hidden globally accessible elements |
setHighlightedPoints | Get or set points or regions for plots |
setICA | Get or set globally accessible elements |
setInclusionLevels | Get or set globally accessible elements |
setLabelledPoints | Get or set points or regions for plots |
setLocalData | Load local files |
setMultipleFilesData | Load local files |
setNormalisedGeneExpression | Get or set globally accessible elements |
setOperation | Perform set operations on selected groups |
setOperationIcon | Create an icon based on set operations |
setPCA | Get or set globally accessible elements |
setPrecision | Get or set globally accessible elements |
setSampleInfo | Get or set globally accessible elements |
setSelectedPoints | Get or set points or regions for plots |
setSignificant | Get or set globally accessible elements |
setSpecies | Get or set globally accessible elements |
setURLtoDownload | Get or set globally accessible elements |
setZoom | Get or set points or regions for plots |
showAlert | Show or remove an alert |
showGroupsTable | Present groups table |
sidebar | Sidebar without a well |
signifDigits | Get number of significant digits |
singleDiffAnalyses | Perform statistical analysis on a given splicing event |
sortCoordinates | Sort coordinates for some event types |
spearman | Perform Spearman's test and return interface to show the results |
startProcess | Signal the program that a process is starting |
startProgress | Create a progress object |
styleModal | Style and show a modal |
subsetGeneExpressionFromMatchingGenes | Subset gene expression based on (full or partial) matching genes |
survdiff.survTerms | Test differences between survival curves |
survfit.survTerms | Compute estimates of survival curves |
survivalServer | Server logic |
survivalUI | User interface |
tabDataset | Creates a 'tabPanel' template for a 'datatable' with a title and description |
table2html | Create HTML table from data frame or matrix |
tableRow | Create a row for a HTML table |
templateServer | Server logic |
templateUI | User interface |
testGroupIndependence | Multiple independence tests between reference groups and list of groups |
testSingleIndependence | Multiple independence tests between a reference group and list of groups |
testSurvival | Test the survival difference between groups of patients |
testSurvivalCutoff | Test the survival difference between two survival groups given a cutoff |
textSuggestions | Create script for auto-completion of text input |
toJSarray | Convert vector of values to JavaScript array |
transformData | Transform data in data frame |
transformOptions | Show variable transformation(s) |
transformValues | Transform values as per a given type of transformation |
trimWhitespace | Trims whitespace from a word |
ttest | Perform unpaired t-test analysis and return interface to show the results |
uniqueBy | Check unique rows of a data frame based on a set of its columns |
updateClinicalParams | Update available clinical attributes when the clinical data changes |
updateFileBrowserInput | Change the value of a fileBrowserInput on the client |
updateProgress | Update a progress object |
vennEvents | Compare the number of events from the different programs in a Venn diagram |
warningAlert | Show or remove an alert |
warningDialog | Alert in the style of a dialogue box with a button |
warningModal | Style and show a modal |
wilcox | Perform Wilcoxon analysis and return interface to show the results |