$.cytoFrame |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
analysePlate |
Apply a statistic to the data from each well in a plate |
appendGates |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
appendGates, gateSet_method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
appendGates-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
appendGates-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
applyGate |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
applyGate-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
applyGate-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
applyGate-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
as.all |
Coercion without introduction of NAs |
as.gateSet |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
as.gateSet-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
barploterrbar |
Barplot with error bars. |
cframe |
A sample cytoFrame object - German Cancer Research Center Heidelberg - |
colnames-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
colnames-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
colnames<--method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
colnames<--method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
combineFrames |
Combine the cytoFrames within a cytoSet according to some grouping factor |
combineGates |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
csApply |
Apply a function over the intensities in a cytoSet |
cset |
A sample cytoSet object - German Cancer Research Center Heidelberg - |
cytoFrame |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
cytoFrame-class |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
cytoSet |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
cytoSet-class |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
description-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
description<--method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
devDims |
Device Dimensions for plate plots |
devRes |
Resolution of current plotting device |
drawGate |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
drawGate-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
exprs-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
exprs<--method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
fitNorm2 |
Fit bivariate normal distribution. |
gate |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
gate-class |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
gate-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
gate<- |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
gate<--method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
gateSet |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
gateSet-class |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
getAlphaNumeric |
Convert from plate coordinates to alphanumeric notation. |
getPradaPar |
Set and query global parameters for functions in the prada package |
hist-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
hist-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
killProgress |
A simple tcltk progress window |
length-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
length-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
lines-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
names-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
names-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
names<--method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
names<--method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
ncol-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
nrow-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
pData-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
phenoData-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
phenoData<--method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
plot-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
plot-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
plotNorm2 |
Plot fitted bivariate normal distribution. |
plotPlate |
Plot a well statistic for microtiter plates. |
progress |
A simple tcltk progress window |
read.fcs |
Read an FCS file |
readCytoSet |
Create a cytoSet object from one or more FCS 3.0 files |
readFCS |
Read an FCS file |
readFCSdata |
Auxiliary functions for readFCS |
readFCSgetPar |
Auxiliary functions for readFCS |
readFCSheader |
Auxiliary functions for readFCS |
readFCStext |
Auxiliary functions for readFCS |
removeCensored |
Remove rows that contain censored data |
removeCensored-method |
Remove rows that contain censored data |
setPradaPars |
Set and query global parameters for functions in the prada package |
show-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
show-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
show-method |
'gate': a class for subsetting flow-cytometry data by defining regions in two-dimesional projections of the data |
show-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
split-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
threePanelPlot |
Visualize cytometry data |
thresholds |
Discretize a two-dimensional data space into quadrants by applying thresholds |
touchFCS |
Check for FCS files |
updateProgress |
A simple tcltk progress window |
vpLocation |
Absolute location of current viewport |
[-method |
'cytoFrame': a class for storing observed quantitative properties from a population of cells, most likely from a FACS run or, alternatively, from automated microscopy |
[-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
[-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
[[-method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |
[[-method |
'gateSet': a class for subsetting flow-cytometry data by defining multiple regions in two-dimesional projections of the data |
[[<--method |
'cytoSet': a class for storing raw data from a quantitative cell-based assay |