Statistical analysis of peptide microarrays


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Documentation for package ‘pepStat’ version 1.14.0

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baselineCorrect.pSet Substract baseline intensities
baseline_correct Substract baseline intensities
clade peptideSet methods
clade-method peptideSet methods
clade-methods peptideSet methods
create_db Create a peptide collection
end-method peptideSet methods
featureID peptideSet methods
featureID-method peptideSet methods
makeCalls Make antibody binding positivity calls
makePeptideSet peptideSet constructor
NormalizeArray Normalize tiling array data using sequence information
normalizeArray Normalize tiling array data using sequence information
peptide peptideSet methods
peptide-method peptideSet methods
peptide<- peptideSet methods
peptide<--method peptideSet methods
peptideSet peptideSet class
peptideSet-class peptideSet class
peptideSet-methods peptideSet methods
pepZscore peptideSet methods
pepZscore-method peptideSet methods
pepZscore<- peptideSet methods
pepZscore<--method peptideSet methods
plotArrayImage Plot microarray images
plotArrayResiduals Plot microarray images
position peptideSet methods
position-method peptideSet methods
ranges-method peptideSet methods
ranges<--method peptideSet methods
restab Result table
shinyPepStat Launch the pepStat Shiny Application
show-method peptideSet methods
slidingMean Data smoothing for peptide microarray.
start-method peptideSet methods
subset-method peptideSet methods
summarizePeptides Add information to a peptideSet and summarize peptides
summary-method peptideSet methods
values-method peptideSet methods
width-method peptideSet methods
[-method peptideSet methods