msa-package |
Multiple Sequence Alignment |
class:MsaAAMultipleAlignment |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
class:MsaDNAMultipleAlignment |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
class:MsaMetaData |
Class 'MsaMetaData' |
class:MsaRNAMultipleAlignment |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
msa |
Unified interface to multiple sequence alignment algorithms |
MsaAAMultipleAlignment |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
MsaAAMultipleAlignment-class |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
msaCheckNames |
Check and fix sequence names |
msaClustalOmega |
Multiple Sequence Alignment with ClustalOmega |
msaClustalW |
Multiple Sequence Alignment with ClustalW |
msaConsensusSequence |
Computation of Consensus Sequence from Multiple Alignment |
msaConsensusSequence-method |
Computation of Consensus Sequence from Multiple Alignment |
msaConservationScore |
Computation of Conservation Scores from Multiple Alignment |
msaConservationScore-method |
Computation of Conservation Scores from Multiple Alignment |
msaConvert |
Convert Multiple Sequence Alignment for Other Packages |
MsaDNAMultipleAlignment |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
MsaDNAMultipleAlignment-class |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
MsaMetaData |
Class 'MsaMetaData' |
MsaMetaData-class |
Class 'MsaMetaData' |
msaMuscle |
Multiple Sequence Alignment with MUSCLE |
msaPackage |
Multiple Sequence Alignment |
msaPrettyPrint |
Pretty-Printing of Multiple Sequence Alignments |
MsaRNAMultipleAlignment |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
MsaRNAMultipleAlignment-class |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
params-method |
Class 'MsaMetaData' |
params-method |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
print-method |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
show-method |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |
version |
Class 'MsaMetaData' |
version-method |
Class 'MsaMetaData' |
version-method |
Classes 'MsaAAMultipleAlignment', 'MsaDNAMultipleAlignment', and 'MsaRNAMultipleAlignment' |