Exploration of marker-gene sequence taxonomic annotations


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Documentation for package ‘metagenomeFeatures’ version 2.0.0

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annotateFeatures Annotating metagenome data with taxonomic information
annotateFeatures-method Annotating metagenome data with taxonomic information
get_gg13.8_85MgDb MgDb-class object with Greengenes Database Version 13.8 85% OTUs
mgdb Metagenome Database class
MgDb-class Metagenome Database class
mgDb_ MgDb-class accessors
mgDb_meta MgDb-class accessors
mgDb_select Querying MgDb objects
mgDb_select-method Querying MgDb objects
mgDb_seq MgDb-class accessors
mgDb_taxa MgDb-class accessors
mgDb_tree MgDb-class accessors
mgFeatures mgFeatures-class constructor
mgFeatures-class mgFeature-class object
mgF_ mgFeatures accessors
mgF_meta mgFeatures accessors
mgF_seq mgFeatures accessors
mgF_taxa mgFeatures accessors
mgF_tree mgFeatures accessors
mock_mgF Example mgFeatures class object
mock_query_df Example Query Data Frame
newMgDb MgDb
select-method Querying MgDb objects
show-method Display summary of MgDb-class object
taxa_ MgDb-class Taxa slot helper functions
taxa_columns MgDb-class Taxa slot helper functions
taxa_columns-method MgDb-class Taxa slot helper functions
taxa_keys MgDb-class Taxa slot helper functions
taxa_keys-method MgDb-class Taxa slot helper functions
taxa_keytypes MgDb-class Taxa slot helper functions
taxa_keytypes-method MgDb-class Taxa slot helper functions