Bayesian Piecewise Constant Regression for DNA copy number estimation


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Documentation for package ‘mBPCR’ version 1.34.0

Help Pages

computeMBPCR Estimate the copy number profile
estGlobParam Estimate global parameters of copy number data
estProfileWithMBPCR Estimate and print the copy number profile of some chromosomes of a sample
estProfileWithMBPCRforOligoSnpSet Estimate and print the copy number profile of some chromosomes of samples in an oligoSnpSet object
importCNData Import the copy number data
jekoChr11Array250Knsp Affymetrix GeneChip Mapping 250K NSP Array data of JEKO-1 cell line (chr. 11)
logAdd Overflow-safe computation of the logarithm of a sum
plotEstProfile Plot the estimated profile of copy number data
rec10k Affymetrix GeneChip Mapping 10K Array data of REC-1 cell line
writeEstProfile Write the estimated profile of copy number data