Plot customizable linear genomes displaying arbitrary data


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Documentation for package ‘karyoploteR’ version 1.6.3

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filterParams filterParams
getChromosomeNamesBoundingBox getChromosomeNamesBoundingBox
getCytobandColors getCytobandColors
getCytobands getCytobands
getDefaultPlotParams getDefaultParameters
getMainTitleBoundingBox getMainTitleBoundingBox
getVariantsColors getVariantsColors
kpAbline kpAbline
kpAddBaseNumbers kpAddBaseNumbers
kpAddChromosomeNames kpAddChromosomeNames
kpAddCytobandLabels kpAddCytobandLabels
kpAddCytobands kpAddCytobands
kpAddCytobandsAsLine kpAddCytobandsAsLine
kpAddLabels kpAddLabels
kpAddMainTitle kpAddMainTitle
kpArea kpArea
kpArrows kpArrows
kpAxis kpAxis
kpBars kpBars
kpDataBackground kpDataBackground
kpHeatmap kpHeatmap
kpLines kpLines
kpPlotBAMDensity kpPlotBAMDensity
kpPlotCoverage kpCoverage
kpPlotDensity kpPlotDensity
kpPlotGenes kpPlotGenes
kpPlotLinks kpPlotLinks
kpPlotLoess kpPlotLoess
kpPlotMarkers kpPlotMarkers
kpPlotNames kpPlotNames
kpPlotRainfall kpPlotRainfall
kpPlotRegions kpPlotRegions
kpPlotRibbon kpPlotRibbon
kpPlotTranscripts kpPlotTranscripts
kpPoints kpPoints
kpPolygon kpPolygon
kpRect kpRect
kpSegments kpSegments
kpText kpText
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makeGenesDataFromTxDb makeGenesDataFromTxDb
plotDefaultPlotParams plotDefaultPlotParameters
plotKaryotype plotKaryotype
prepareParameters2 prepareParameters2
prepareParameters4 prepareParameters4